Research Engineer, Knowledge Systems

Position

Europe

Research Engineer, Knowledge Systems

MindWalk is a global biologics discovery company integrating Bio-native AI, deep data, and advanced lab research to accelerate discovery and development of therapeutic, anti-drug and diagnostic antibodies, peptide-based therapies, vaccines and beyond. We deliver end-to-end solutions spanning target exploration, discovery, engineering, characterization, production, and humanization—available as full-service partnerships, existing asset co-development or modular SaaS access. We partner with leading biotech and pharmaceutical organizations, applying our unified biointelligence ecosystem to advance next-generation biologics that improve lives.

We're looking for a hands-on engineer to architect how biological information flows through MindWalk, from raw data to something scientists and AI agents can actually use. You'll define the data domains, models, metadata, and access patterns that turn scattered biological data into a coherent, navigable system.

Ontology and formal knowledge representation are part of the job, but the core of this role is information architecture: deciding how information is organized, versioned, cataloged, and served so it stays trustworthy as it scales.

• Real production experience with data and information architecture: modeling, authoritative sources, lineage, contracts, and storage trade-offs.
• Experience designing metadata models, catalogs, or registries for findability and retrieval.
• Some working knowledge of RDF/OWL/SHACL or comparable knowledge-representation tools.
• Experience in biomedical, pharmaceutical, or another evidence-heavy scientific domain.
• An MSc or PhD in a relevant field, or equivalent experience.
• Good written and oral communication skills in English.

• Real production experience with data and information architecture: modeling, authoritative sources, lineage, contracts, and storage trade-offs.
• Experience designing metadata models, catalogs, or registries for findability and retrieval.
• Some working knowledge of RDF/OWL/SHACL or comparable knowledge-representation tools.
• Experience in biomedical, pharmaceutical, or another evidence-heavy scientific domain.
• An MSc or PhD in a relevant field, or equivalent experience.
• Good written and oral communication skills in English.

• Ontology tooling such as LinkML, ROBOT, or SSSOM.
• Agent frameworks like LangGraph or Model Context Protocol, or hybrid graph/vector retrieval.
• AWS or other cloud-native deployment experience.
• Familiarity with FAIR data principles or regulated scientific environments.
• Working knowledge of Information Management domains like Master Data Management (MDM), Data Governance, and Data Security.